FUBP3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018911
Fusion event
HBV-FUBP3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1774
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37.55
Start
133474943/130599556 (Hg38)
End
133474943/130599556 (Hg38)
Location type
Intron2
Target gene
FUBP3
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-128-3p
Nearest miRNA
hsa-let-7a-1/Upstream/358068; hsa-mir-126/Downstream/26741;
Nearest TSS
ENST00000422679/Upstream/18461; ENST00000487406/Downstream/20858;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/19447, chr9-CpG: 632/Downstream/59591
Upstream sequence
AATAGACAGGAAACTGTATCTACATGTCACCACAGTTAAGAGTTGAGTTCTACTGAATATTGGTTAACTGATAAACAATAAATAGTAGTGCTGGCTAAAA
Downstream sequence
GCCGAGAGACACACAAGATTGCAGTATTTTATGTTGCTGAAGGACAAGAAGACAAACACTCCATTCTCACCAATACAGGAGGAAGTCAAGCATATGAAGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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