TMEM87A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018928
Fusion event
HBV-TMEM87A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1762
Integrated sequence
GACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTA| |AAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTAC
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37.55
Start
42517912/42225714 (Hg38)
End
42517912/42225714 (Hg38)
Location type
Intron5
Target gene
TMEM87A
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-107 ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/26048; hsa-mir-10393/Downstream/1567945;
Nearest TSS
ENST00000557528/Upstream/7708; ENST00000561871/Downstream/3090;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/17351, chr15-CpG: 32/Downstream/47540
Upstream sequence
TAATTCCCTGGTTTTTTTTGTTACTCAGTGGGTGAGTGTTGGAGTCTGGTATCCTTTTTACTGGAAGGTGGAAAATGCCTACCCCCACCTAAGCCACATT
Downstream sequence
agaggtggggttttgccatgttggccgaaaccatgttggctcaaactcctggattcatgtgatctgcccaccttggcctcccaaagtgctgggattacag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate