Basic Information
VIS ID
TVIS10018929
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1631
Integrated sequence
CTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCC| |ACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGA
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37.55
Start
33543234/33740767 (Hg38)
End
33543234/33740767 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/2846782; hsa-mir-11401/Downstream/422811;
Nearest TSS
ENST00000527434/Upstream/186359; ENST00000570121/Downstream/61997;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/59572, chr16-CpG: 77/Downstream/29927
Nearby gene
ENPP7P13
Upstream sequence
GGCTGCTCGGCTCCCTGACGGTTGGCTCTCTAGTCTGGCCTCTTAAAGGTAAAAGCTGGTTCAAGTGCACCGTTTCCTTGTGCTTCTCTTTCACACAGGT
Downstream sequence
ACCTAATCAAAATGTATAAAAAATTATCAAATTTGATGTACTTACACACAATAAAGTTGCTACAAGCATTAGATATGAATAACGTTGTCCATTTGGAAAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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