GABARAPL2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018931
Fusion event
HBV-GABARAPL2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1796
Integrated sequence
CTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAAT| |TGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTT
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37.55
Start
75610671/75576773 (Hg38)
End
75610671/75576773 (Hg38)
Location type
Intron3
Target gene
GABARAPL2
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-92a-3p ; hsa-mir-374a-5p
Nearest miRNA
hsa-mir-1225/Upstream/5546351; hsa-mir-11401/Downstream/1292163;
Nearest TSS
ENST00000527434/Upstream/1165; ENST00000569234/Downstream/25230;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/9811, chr16-CpG: 47/Downstream/46234
Upstream sequence
CTCAGACAATGTATTCCCTAAACATAGTCATTTACTCAAAGGTTGTCATTTCTTTAAATTTCTGTTCTGTGTACTCCCTTTTCTGGCAGGCATTGAAATA
Downstream sequence
CTTTGGATCCCAGATACATTTAGAGCTTTTTGCATTAAGTGTGAGGAAAATAACTTCTCTTTGATGATGTTGATACACCATGTGGGCACCCTGGGGCACA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate