VISDB Viral Integration Site DataBase

VIS ID

TVIS10018932

Fusion event

HBV-YWHAE integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

213

Integrated sequence

CTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTT| |TTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATT

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

1255920/1352626 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-877-3p ; hsa-mir-92b-3p ; hsa-mir-484 ; hsa-mir-30e-3p ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-221-3p ; hsa-mir-100-5p ; hsa-mir-30a-3p ; hsa-mir-26a-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-302a-5p ; hsa-mir-5002-5p ; hsa-mir-1266-3p ; hsa-mir-31-5p ; hsa-mir-6758-5p ; hsa-mir-653-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-3977 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-4276 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6806-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-5192 ; hsa-mir-4445-5p ; hsa-mir-4468 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-4691-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6734-5p ; hsa-mir-6825-5p ; hsa-mir-4725-3p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6783-5p ; hsa-mir-4433b-3p ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4540 ; hsa-mir-3591-5p ; hsa-mir-4711-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-6838-3p ; hsa-mir-548b-3p ; hsa-mir-3133 ; hsa-mir-142-3p ; hsa-mir-203a-5p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-5190 ; hsa-mir-10b-3p ; hsa-mir-4495 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-3662 ; hsa-mir-6509-5p ; hsa-mir-2053 ; hsa-mir-4775 ; hsa-mir-5581-3p ; hsa-mir-8068 ; hsa-mir-569 ; hsa-mir-5087 ; hsa-mir-6872-3p ; hsa-mir-329-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-32-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p

Nearest miRNA

hsa-mir-3183/Upstream/330067; hsa-mir-10226/Downstream/361277;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/28159, chr17-CpG: 113/Downstream/46686

Upstream sequence

gagtTCATTGGAAACACTCCATGATAGTCAGAATTTTCAATACCTTTCACAAATGGGATCTTGCCCTACCATGCGTATTTTGTCTGATCATTGCACTTAC

Downstream sequence

gcaattctccggcctcagcctcctgagtagctgggactacaggagcccgccaccacgcccagccaattttttgtatacttagtagggacggggtttcccc