Basic Information
VIS ID
TVIS10018933
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1797
Integrated sequence
TTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT| |GGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTT
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37.55
Start
77013793/79017711 (Hg38)
End
77013793/79017711 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/1620657; hsa-mir-1250/Downstream/689465;
Nearest TSS
ENST00000595228/Upstream/7844; ENST00000582295/Downstream/5103;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7687, chr17-CpG: 78/Downstream/6230
Nearby gene
C1QTNF1-AS1
Upstream sequence
TGAGGGTTGCTTCCTCAGCCCCAGCCACTCTTCACAGAGTCCCCTCCTTCTGGAGCCCAGGCCAAGGCCTGTGGGGATGGGAGGTGGTGCACGCTGAAGA
Downstream sequence
aaggcattttaacctcccgggatctgagatgagataggaggtcacaagatacaggccacaatgaccctgctcatataacaggatgcagtataaaggctgg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate