hsa-mir-3691-3p _LIHC.png
TNFSF14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018937
Fusion event
HBV-TNFSF14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1774
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37.55
Start
6668169/6668158 (Hg38)
End
6668169/6668158 (Hg38)
Location type
Intron3
Fragile sites / regions
FRA19B
Target gene
TNFSF14
miRNAs that regulate target gene
hsa-mir-5698 ; hsa-mir-3689d ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-7641 ; hsa-mir-7977 ; hsa-mir-143-5p ; hsa-mir-3650 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-4433b-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-3691-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-4480 ; hsa-mir-4670-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-361-3p ; hsa-mir-1224-3p ; hsa-mir-3691-3p ; hsa-mir-2114-5p ; hsa-mir-3149 ; hsa-mir-4775 ; hsa-mir-411-5p ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-4705 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-4438
Nearest miRNA
hsa-mir-1227/Upstream/251647; hsa-let-7e/Downstream/68554;
Nearest TSS
ENST00000633603/Upstream/64055; ENST00000596543/Downstream/1959;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/8075, chr19-CpG: 39/Downstream/38943
Upstream sequence
GACCTCGCCACAGAGGGTAGGTGGGGAGACTGGACAGCCATGTCAGGTTTGGGGATGACCCCACACTTGGGTGACATGCACCAAGAGCCTAGGAGAGAGG
Downstream sequence
taagaccagcctgggcaacacaacaagacctcatctctacaaaaaatttttaagattagccaggcatggtggtgcatgcctgtagtcccagctactcatg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate