VISDB Viral Integration Site DataBase

VIS ID

TVIS10018944

Fusion event

HBV-CLSPN integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

36203647/35738046 (Hg38)

Location type

Exon4

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-4668-5p ; hsa-mir-7855-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-4756-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4503 ; hsa-mir-4477a ; hsa-mir-6792-5p ; hsa-mir-545-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548p ; hsa-mir-4760-3p ; hsa-mir-1303 ; hsa-mir-3149 ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-29a-5p ; hsa-mir-483-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-5096 ; hsa-mir-4259 ; hsa-mir-4425 ; hsa-mir-450b-3p ; hsa-mir-5089-5p ; hsa-mir-571 ; hsa-mir-6513-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p

Nearest miRNA

hsa-mir-12136/Upstream/1068352; hsa-mir-101-1/Downstream/1423517;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/18861, chr1-CpG: 82/Downstream/31277

Upstream sequence

TTGCCCAGAGACAACTACAGCCATCAGTTCTTATATATCCTTCAGAGGAACATGGGCATGTACATGCAAATATGTATATCCACTATTTTCCCCTTTTTAT

Downstream sequence

ctaccttcaGTATTGAACTCATTTAAGTTTCTTTCTTGCCCACTAGACTATAACTTTCTCAAAATCAGAGACCTTATGTATATCAACATAGAAAATATCT