Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018947
Fusion event
HBV-MFSD14A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
End
100507007/100041451 (Hg38)
Location type
Intron1
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-664a-3p ; hsa-mir-423-3p ; hsa-mir-26a-5p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-574-5p ; hsa-mir-921 ; hsa-mir-3174 ; hsa-mir-4255 ; hsa-mir-3659 ; hsa-mir-3691-3p ; hsa-mir-4658 ; hsa-mir-6790-5p ; hsa-mir-183-3p ; hsa-mir-944 ; hsa-mir-6841-3p ; hsa-mir-4452 ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-20a-3p ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-2681-5p ; hsa-mir-4786-3p ; hsa-mir-4735-5p ; hsa-mir-575 ; hsa-mir-4676-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1995280; hsa-mir-11399/Downstream/239790;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2603, chr1-CpG: 45/Downstream/91123
Upstream sequence
CTCTTTTGCAAAATCTTTAACTTGCTTAACTTTCTTTCTTTTAGTTGTGTTCAAGAGTCGGAATGCCAAACCTGAAGGAATCCTAGCACCTACCTTATCT
Downstream sequence
caagttcttgagagcacagaccgtgtaagtcattgctgtatccttaacacccagccctgtgcctggcacatagcaaaggcctgcttgaataattacataa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.