HMGCS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018948
Fusion event
HBV-HMGCS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37.55
Start
120291052/119748429 (Hg38)
End
120291464/119748841 (Hg38)
Location type
Exon1
Target gene
HMGCS2
Nearest miRNA
hsa-mir-101-1/Upstream/2653701; hsa-mir-1182/Downstream/26101746;
Nearest TSS
ENST00000473358/Upstream/8967; ENST00000608123/Downstream/10573;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/35780, chr1-CpG: 21/Downstream/104345
Upstream sequence
ATTCACTGCATGTCAAGGATCAACTGCTGGAGGAGCACTCATTTATCAAAAAGCCCAATTTACATACGCATTACTTAATCTGACAGGCACAGAGAAAGGA
Downstream sequence
CTTAAATAAACAAAAAGTCATTCAATCATGGGTCTCCTCTTGGGCACCCTGCCCCCAGTACCTGCTTCTTGCCCGAGGTGTGGCTGTGCAGAGGGGCTCC
Target sequence
AAAATTTGGAGATTCACAGGAACAGCACAGAAGTTTAACAATATTAATAATAATAAAGTTCTAACACATGACAGGAAAGTTTATCTGGATCTTGAAGGCAACAGCTGATCTGCATGCACATTTCTGGAGTCCAGTGATTCAGGAAGAGGTCTTCTCTCCATTGCTCCATCTTGCTCTTTCACAAAGGACCCCTAGTCCATAGCACCATAAGCCCAGGACAGTGATTGCAGCATGGAGAGGAATGAAGGGCCCGCT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate