Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018950
Fusion event
HBV-COPA integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
q23.2
Reference genome
End
160312936/160343146 (Hg38)
Location type
Exon33
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-744-5p ; hsa-mir-421 ; hsa-mir-92b-3p ; hsa-mir-193b-3p ; hsa-mir-423-3p ; hsa-mir-23b-3p ; hsa-mir-10a-5p ; hsa-mir-1260b ; hsa-mir-127-5p ; hsa-mir-3591-5p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-7153-5p ; hsa-mir-142-3p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-539-5p ; hsa-mir-4712-3p ; hsa-mir-3976 ; hsa-mir-648 ; hsa-mir-4517 ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4634 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-4746-3p ; hsa-mir-4695-3p
Nearest miRNA
hsa-mir-101-1/Upstream/443067; hsa-mir-1182/Downstream/884040;
Nearest CpG islands
chr1-CpG: 38/Target, None/Upstream, None/Downstream
Upstream sequence
aagatggagaataacgatgaaaatggctttcagtggagaagtgatgtggggtgagggttgtgggagtggatagttgccccatggctgggtctgggtccct
Downstream sequence
GTAAGTTTGCCTTAACAGAGTCACAACTCTGAGGGAGAAATACTCAACCAGATCAgcttgcattcatggcagaaggcaaagttgagccagtgtgtgcaaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.