Basic Information
VIS ID
TVIS10018952
Fusion event
HBV-LOC105371646 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37.55
Start
183418597/183449462 (Hg38)
End
183418597/183449462 (Hg38)
Location type
Intronic
Target gene
LOC105371646
Nearest miRNA
hsa-mir-101-1/Upstream/3011072; hsa-mir-1182/Downstream/9266866;
Nearest TSS
ENST00000473358/Upstream/30860; ENST00000493609/Downstream/22754;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30933, chr1-CpG: 62/Downstream/23028
Nearby gene
SMG7-AS1
Upstream sequence
ttatgtgcctggcagtgtgctgagactggataaaatggtgactaaccagacatactgtcctgacattatgaagacttggggggagatacacatgaatcaa
Downstream sequence
AATTATATAGCATAGGGCAATGTTGCAGAAGATAGGCTGTGCTGAATTGTTCAAAGCCAAAACTTCAATATTCCTATGGGCTAACTTATCCTAGAATAGC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate