Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018953
Fusion event
HBV-PLD5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
End
242329664/242166362 (Hg38)
Location type
Intron5
Target gene
miRNAs that regulate target gene
hsa-mir-516b-5p ; hsa-mir-4665-3p ; hsa-mir-378a-5p ; hsa-mir-505-5p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-3117-5p ; hsa-mir-6730-3p ; hsa-mir-645 ; hsa-mir-1908-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-5684 ; hsa-mir-219a-1-3p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-924 ; hsa-mir-3978 ; hsa-mir-6730-5p ; hsa-mir-329-5p ; hsa-mir-1303 ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-4311
Nearest miRNA
hsa-mir-101-1/Upstream/1034016; hsa-mir-3124/Downstream/1179814;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/108664, chr1-CpG: 177/Downstream/357252
Upstream sequence
ctatctgactccaaaacctgtattttttccactataacaccatgccTTCCAACTTTGAGCACTTGTAACTTTTTATTATACTTTTTAATAATCATTAGTC
Downstream sequence
CATGTTCCAAATGCTCTGAGTATAGGCACTGGCTGGTAAGCTTAGTGGAGTGTTATACAACATGGAAGTCTAACTGGCAGTTCAATGTCCCAAAAGTTGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.