Basic Information
VIS ID
TVIS10018954
Fusion event
HBV-MIR3681HG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37.55
Start
12688748/12548622 (Hg38)
End
12688748/12548622 (Hg38)
Location type
Intron4
Target gene
MIR3681HG
Nearest miRNA
hsa-mir-3681/Upstream/349421; hsa-mir-10b/Downstream/188745;
Nearest TSS
ENST00000437798/Upstream/234305; ENST00000414086/Downstream/50365;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/763495, chr2-CpG: 204/Downstream/167877
Upstream sequence
TACAGCAGTGGTTTTTACTCAAGCCAAAGTGGAGTACAACTACAGAGGTCCCTTTTGCTTTCATAAGATTTCGAGCACTGGTGTGAAATTCCACGTTTTA
Downstream sequence
aaatatagatacagatgcagacatacacatCCTTTTGATCCGGTTTCTCTGGGAAACGGTGCCTAACACAGGCATAgagggggtgatgaccagaaagtga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate