MTIF2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018955
Fusion event
HBV-MTIF2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37.55
Start
55482355/55255219 (Hg38)
End
55482355/55255219 (Hg38)
Location type
Intron11
Fragile sites / regions
FRA2S
Target gene
MTIF2
miRNAs that regulate target gene
hsa-mir-484 ; hsa-mir-3145-3p ; hsa-mir-6500-3p ; hsa-mir-1255b-2-3p ; hsa-mir-548m
Nearest miRNA
hsa-mir-1301/Upstream/1406014; hsa-mir-10b/Downstream/727748;
Nearest TSS
ENST00000437798/Upstream/5685; ENST00000625718/Downstream/8649;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/31424, chr2-CpG: 42/Downstream/13718
Upstream sequence
TTTTATTTCCATGTATGGATATAAGATGAAATTAGCCAGAGTGTCTTAACCTAACAGAATATTTTACAGAGTTAAGAAGTAAAATTATAAACAGGCACAT
Downstream sequence
tatgttctataaagtcaccaaaactattgaattagcaaatattgaaccactgttctgaggggaaatatagagttgggttcctgcaagcctttagtcacat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate