Basic Information
VIS ID
TVIS10018957
Fusion event
HBV-LOC105373622 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37.55
Start
133029907/132272334 (Hg38)
End
133029907/132272334 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373622
Nearest miRNA
hsa-mir-1285-2/Upstream/15254; hsa-mir-10b/Downstream/161377;
Nearest TSS
ENST00000437798/Upstream/14365; ENST00000622084/Downstream/22043;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/14167, chr2-CpG: 79/Downstream/80409
Nearby gene
MIR663B
Upstream sequence
GTCTCTTTTGTGGCTAATAATCCTGCTTTGGGAGTAGATCTGATTTCTGAAAATCATTTTGTATCCAAAATAATGTAAGCCTGTAAAGGAAAAACCTGAT
Downstream sequence
GGCCCGTGCTTTTAAAGGCTGAAATCCcggtggttcaggcctgtcgtcccagcactttgggaggcccaggagggcgggtcacttgaggtcaagggtatga
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate