Basic Information
VIS ID
TVIS10018958
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37.55
Start
156179893/155323381 (Hg38)
End
156179893/155323381 (Hg38)
Nearest miRNA
hsa-mir-128-1/Upstream/3954970; hsa-mir-10b/Downstream/3863454;
Nearest TSS
ENST00000437798/Upstream/355378; ENST00000416888/Downstream/701195;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/623824, chr2-CpG: 82/Downstream/996358
Nearby gene
KCNJ3
Upstream sequence
actttcgcttttcacaagctctcttgcccttccacctttcactttgcgataatgcaacaagaaacccctcaccagatgctggctccttgagttggtgttt
Downstream sequence
ccataatgttctgtatcctttgcagctaagtatggtcgcataaatcaattctatctaccaagatgcaagaagaaacagatctaacttttgggttgggcct
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate