Basic Information
VIS ID
TVIS10018960
Fusion event
HBV-LOC101928278 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37.55
Start
217967794/217103071 (Hg38)
End
217967883/217103160 (Hg38)
Location type
Intronic
Target gene
LOC101928278
Nearest miRNA
hsa-mir-10b/Upstream/3344912; hsa-mir-1244-1/Downstream/797353;
Nearest TSS
ENST00000437798/Upstream/107165; ENST00000452813/Downstream/179579;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/292580, chr2-CpG: 23/Downstream/653396
Nearby gene
DIRC3-AS1
Upstream sequence
AGTTAGTGAGCAGGGAAGCTAGTATCTGTATGATTACACAGAGCCCAAGTATAGAACATATGATGGGCAGCGAGACATTATCAAAGTTTTCTGTTTTGAG
Downstream sequence
agaactctccagggtctcttacaaggaaattcatcccattcataagggctctctcctcaggacctgacctaatcacctcttaaattcccctccttttaat
Target sequence
tatggtcagattctggtgagggctctcttcctggcatgcagaaaaccaccttcttactgtgtcctcatatgacagggaaaaagggtgag
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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