hsa-mir-6844 _LIHC.png
GALNTL6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018966
Fusion event
HBV-GALNTL6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37.55
Start
173111231/172190080 (Hg38)
End
173111231/172190080 (Hg38)
Location type
Intron2
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/1003788; hsa-mir-1305/Downstream/1078080;
Nearest TSS
ENST00000502981/Upstream/137635; ENST00000457021/Downstream/76074;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/376113, chr4-CpG: 154/Downstream/978712
Upstream sequence
TACACACCCATATAGTTAGTCATAAACTATAGTTTTCGTTTGAAAGGCAATAGAGTCCTCATGAGTGTCTTGGGAGAAGGTAGTGATACAGTGATTCAAG
Downstream sequence
ATTTTTAAAAGAATACAAGTAAGAAAAGGGAGGCTTGAAGATTATGTTTGAAAACATTTCCCTCCCTGCTATCTCTCTTTCTTTGTCTTCCCCATTATAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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