Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018968
Fusion event
HBV-C6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
Start
End
41198387/41198285 (Hg38)
Location type
Intron14
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-4291 ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-5196-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-6800-5p ; hsa-mir-4539 ; hsa-mir-6865-3p ; hsa-mir-3200-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485
Nearest miRNA
hsa-mir-10397/Upstream/2640724; hsa-mir-103a-1/Downstream/12753219;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/362514, chr5-CpG: 26/Downstream/311396
Upstream sequence
TGTGATAAAACAAATAGAAAATGAAAATGACTTTAAAGAAGTTTCGGGATTAACTTTAAGTAACAAGAACAGAGAAAACCAAGAGTCAGCAAACTCCTTT
Downstream sequence
CAATCATTCATAAACCTCTTACTCCCATTGACAGTGGCATTAGTAGATGCTTTTAGGAGAGCAAAACAGTATACCatcttcaatggaatatttaacaacc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.