Basic Information
VIS ID
TVIS10018976
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37.55
Start
34708899/34669287 (Hg38)
End
34708988/34669376 (Hg38)
Location type
Intron
Target gene
NPSR1 ; NPSR1-AS1
Nearest miRNA
hsa-mir-1183/Upstream/1936210; hsa-mir-10399/Downstream/271384;
Nearest TSS
ENST00000635602/Upstream/10878; ENST00000605778/Downstream/269861;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/590140, chr7-CpG: 203/Downstream/367148
Upstream sequence
agttacatttccaaaatatatccagaagccaaccatatcttaccttctccaccactgccacctagttcaagccacaattatctttcacttagattactgc
Downstream sequence
acatgataaaaccccatctctactaaaaatacaaaaattagccaggcgtggtggcaggtgcctgcagtcccagccactcaggaggctgaggctgaggcag
Target sequence
tatggtggctcacgcctgtaatcccagcactttgggagatcaaagcgggtggatcatttgaggtcaggagtttgagaccagcctggcca
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate