Basic Information
VIS ID
TVIS10018980
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37.55
Start
145708578/146011485 (Hg38)
End
145708578/146011485 (Hg38)
Nearest miRNA
hsa-mir-10399/Upstream/2628685; hsa-mir-153-2/Downstream/1366532;
Nearest TSS
ENST00000635602/Upstream/330116; ENST00000637105/Downstream/104517;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1175325, chr7-CpG: 70/Downstream/104697
Nearby gene
CNTNAP2
Nearest cancer related gene
CNTNAP2(TSG, No orient)
Upstream sequence
CTGCGAGCGAGAAACAAAAATTCCTTCTAGGAGATACCAGGAGATAGACAAATCATAGTACGGACAACTCACACATTTCAACAATGTTATGTGATGTGTA
Downstream sequence
agtagctgagattacaggtgccagccaccatgcctggctaatttctgtattttagtaaagatggggtttcaccatgttggtcagtctggtctcgaactcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate