Basic Information
VIS ID
TVIS10018981
Fusion event
HBV-MIR1268A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
GRCh37.55
Start
37112646/37255128 (Hg38)
End
37112646/37255128 (Hg38)
Location type
Intron2
Target gene
MIR1268A
Nearest miRNA
hsa-mir-124-1/Upstream/7297780; hsa-mir-10400/Downstream/4015920;
Nearest TSS
ENST00000518652/Upstream/185710; ENST00000517897/Downstream/151596;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2018535, chr8-CpG: 351/Downstream/439298
Upstream sequence
ccacgcacaccaagaaataggacattgttagcatccagtaagcctcctatgtgtttcttttctaccacactctgcctcctttactggaggagattgctgt
Downstream sequence
ctcccaaagtgctgggattacaggcatgagccaccacacctggccTAAATAAGGCTTTTCTGGCATAATCTTTAGGTTCAAACTTCAATTTCAGGCTAAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate