Basic Information
VIS ID
TVIS10018982
Fusion event
HBV-LOC101929709 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37.55
Start
90760623/89748395 (Hg38)
End
90760623/89748395 (Hg38)
Location type
Intron4
Target gene
LOC101929709
Nearest miRNA
hsa-mir-12123/Upstream/9506922; hsa-mir-10400/Downstream/1457090;
Nearest TSS
ENST00000518652/Upstream/23465; ENST00000517696/Downstream/8799;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1420143, chr8-CpG: 92/Downstream/8912
Upstream sequence
aattgtggtggaggtggtgagatgtcatctttgtggatgtatcttaaaagtgggataaaagagattttatgatggaatatatgtagaatatgagagaaaa
Downstream sequence
aaaattaggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate