Basic Information
VIS ID
TVIS10018984
Fusion event
HBV-LOC102723803 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37.55
Start
1308481/1308481 (Hg38)
End
1308481/1308481 (Hg38)
Location type
Intronic
Target gene
LOC102723803
Nearest miRNA
hsa-mir-1302-9/Upstream/1278200; hsa-let-7a-1/Downstream/3541816;
Nearest TSS
ENST00000422679/Upstream/253857; ENST00000637134/Downstream/671809;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/256241, chr9-CpG: 266/Downstream/706350
Nearby gene
DMRT2
Upstream sequence
agagcattatctaggaacttcagtactgaggattgtgatacctttgttttgatcttaattagaatgaatgcaaagtatcttcattaattataatgcatgc
Downstream sequence
CTTTTCGTTAAGCTAAAAATGTACTTGCTTTTTGTCTATATTGCAAATGTTTTTGGCTGTATAGATTTTTGTGTATTTTATATTCTAGGTTGATCTGTAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate