Basic Information
VIS ID
TVIS10018986
Fusion event
HBV-CNTRL integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37.55
Start
123851358/121089080 (Hg38)
End
123851358/121089080 (Hg38)
Location type
Intron1
Target gene
CNTRL
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/844030; hsa-mir-12126/Downstream/1031002;
Nearest TSS
ENST00000422679/Upstream/784; ENST00000468952/Downstream/21983;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/13773, chr9-CpG: 121/Downstream/112009
Upstream sequence
cagagctttggaaggccaaggcagtaggatcatttgaggccaggagttcagagaccagtctgggtaatgtagcaagacctcatctctacacaaaaatgtt
Downstream sequence
TCCATAGAGTAAATCGCTAAATAGAAGCAAAAAGATAAGAGAGACAAAAATTTTAGCGTGCAGTAAAGGTGTCTCAAAATCTGCAACATAATATGCATTT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate