ZNF365 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018987
Fusion event
HBV-ZNF365 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q21.2
Reference genome
GRCh37.55
Start
64383363/62623603 (Hg38)
End
64383371/62623611 (Hg38)
Location type
Intron5
Fragile sites / regions
FRA10C
Target gene
ZNF365
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-7-5p ; hsa-mir-223-3p
Nearest miRNA
hsa-mir-1265/Upstream/5319044; hsa-mir-107/Downstream/749346;
Nearest TSS
ENST00000439456/Upstream/103155; ENST00000461412/Downstream/20162;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/248942, chr10-CpG: 152/Downstream/181064
Upstream sequence
TACAAAAGCAAACCTGGTATCCCCAATTGCTTTTCTCTTGAGGTTGGCTTAACTTTATTTATCTTCTGTCCTGGGTCACTGCCCCTGAGGTGCTTCAAAA
Downstream sequence
CTCTGAGAGAAAGAACAGAGATGGCAGCAAATGTGGCCTCATAGAAGCCCCACAGCAGTGGAACAGGGGCAGATTTTAGAGTTAGATGTTGTTCCAACCA
Target sequence
GAACTGGA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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