BATF2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018990
Fusion event
HBV-BATF2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37.55
Start
64760356/64992884 (Hg38)
End
64760356/64992884 (Hg38)
Location type
Intron1
Fragile sites / regions
FRA11H
Target gene
BATF2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-122-5p
Nearest miRNA
hsa-mir-10392/Upstream/90429; hsa-let-7a-2/Downstream/25621;
Nearest TSS
ENST00000527297/Upstream/2370; ENST00000524585/Downstream/4134;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/20606, chr11-CpG: 107/Downstream/21094
Nearest cancer related gene
BATF2(TSG, No orient, 0)
Upstream sequence
gagtgTTGATTTTGTGGAAAAGAGCCAGAATCACAAATCATTTAGTTAGAAAAACAGGCAGGAATATTggaaaagtcgtcaaagaaatgaggggatcata
Downstream sequence
ggtacagtgtgtgcccagctaagttatccttggatttactggactatgctctaagttttggccaagcaaccaggaaaggcaatagggtcagcttctgagg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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