Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018992
Fusion event
HBV-CWF19L2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
End
107275914/107405188 (Hg38)
Location type
Intron8
Target gene
Nearest miRNA
hsa-mir-10392/Upstream/3555208; hsa-let-7a-2/Downstream/3942569;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/385711, chr11-CpG: 20/Downstream/52527
Upstream sequence
caattacaactgaggaggtgggagaaatacctggttacaggctgtcccaggattcctcagatggtaatggaccttgaggacagtcgtccaggacaggaga
Downstream sequence
CATGACACTCAATATTCCTGGAATTAATTACTGAACCAGCTTTCGAACTTTATCTTTTCTACATTGGACTTATTTTGATACTCTGATCATTATTTTATTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.