Basic Information
VIS ID
TVIS10018996
Fusion event
HBV-LOC105370222 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37.55
Start
59865302/59291168 (Hg38)
End
59865302/59291168 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13B ; FRA13C
Target gene
LOC105370222
Nearest miRNA
hsa-mir-1297/Upstream/4116620; hsa-mir-1267/Downstream/1908630;
Nearest TSS
ENST00000623511/Upstream/1058051; ENST00000435636/Downstream/405025;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1656372, chr13-CpG: 52/Downstream/872358
Nearby gene
DIAPH3
Upstream sequence
CTTTATGTTTGAAAAGTTTACTTTTTTTGCTTCTTTTGTTTTAGTCTATTTAATGTCCTCTTTTGTTCCTCCTCTTCCACAGACATTAATTGCAAACCTT
Downstream sequence
CTATATAATAGGCAGAGTATTAGTTACTAGGATTACAGAAAACTTCCTTAGAGTTTTCCTTATGATGTGGGAGACAAGTAATGGCTGCCCACAGCACATG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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