ESRP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019001
Fusion event
HBV-ESRP2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37.55
Start
68264743/68230840 (Hg38)
End
68264929/68231026 (Hg38)
Location type
Exon3
Fragile sites / regions
FRA16B
Target gene
ESRP2
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-125b-5p ; hsa-mir-875-5p ; hsa-mir-3591-5p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-4328 ; hsa-mir-5190 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-512-3p ; hsa-mir-5692a ; hsa-mir-542-3p
Nearest miRNA
hsa-mir-1225/Upstream/1028445; hsa-mir-11401/Downstream/2400;
Nearest TSS
ENST00000527434/Upstream/1695; ENST00000568599/Downstream/1480;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/144757, chr16-CpG: 253/Downstream/4081
Upstream sequence
CAGCGGGCCGGGTGCAGGCGCGGAGCTGGGCCTCTGCGCCCGGCCCGACCTCCGTCTATAAATAGAGCAGCCAGTTGCAGGGCTCCATTCTGCTTTCCAA
Downstream sequence
CCTAGAGACGGAAGTAGAAAGTGCATGTGCACGGAGCCCAGCACTGCCCTGGGTGGGGTAGCCAGAAAGGAGTCCCCGCTATAGAAGGTAGGGGCTTACA
Target sequence
CTTGGGTAGTAGGCTGTGTAGTTCAGGTAGAGTTGAGTGGCTGGCCCTGGATAGTAGGCAACAGGGGTGGGGGCAGCAGGCACCCTGGCAGCTGGGAGCAGTGCTGAAGAGGGGTATAGAGCTGCCGTCTCCGTGGGAATGAGCGTTGGGGTGGCTTGGAAGGTGGTGTAGGTAGGTGGTGAGAGG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate