RASD1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019002
Fusion event
HBV-RASD1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37.55
Start
17398648/17495334 (Hg38)
End
17398732/17495418 (Hg38)
Location type
Exon1
Target gene
RASD1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-335-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6883-5p ; hsa-mir-3175 ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-139-3p
Nearest miRNA
hsa-mir-1253/Upstream/1213246; hsa-mir-10226/Downstream/318062;
Nearest TSS
ENST00000595228/Upstream/10312; ENST00000582325/Downstream/975;
Nearest CpG islands
chr17-CpG: 197/Target, None/Upstream, None/Downstream
Upstream sequence
TTTTAGATCTAGCCTTCTTAAGCATGGGCATTTATTTTAATGAAATTGAAATTATCTCTAGAAAGGCATATATAACCATTTTCTATACTTACTTGCATGT
Downstream sequence
CAGGCTGCTGTTCTTCTTGGCCGAGATCTCGAAGTAGGCGCAGCGCTGGGGGTCGTCGCCCACCAGCTGCTCGATCTCGCGCTGGTCCACCTCGCGGTAG
Target sequence
CTGCACCGAGACCTTGCGGTGCAGGTCTGGGCTCATCTCGCTGGGCAGCTTGGCCATGGCGAAGAGCGCGCGGAACATCTGGTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate