Basic Information
VIS ID
TVIS10019003
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q11.1
Reference genome
GRCh37.55
Start
25263829/26936803 (Hg38)
End
25263918/26936892 (Hg38)
Nearest miRNA
hsa-mir-1180/Upstream/7592229; hsa-mir-10226/Downstream/357018;
Nearest TSS
ENST00000595228/Upstream/4243969; ENST00000583786/Downstream/63033;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/160990, chr17-CpG: 114/Downstream/25569
Nearby gene
MIR4522
Upstream sequence
ttcatctacatgtgagggtgagggtgagggtgagggttaggggttaggggttaggggttagggctagggctagggctagggctagggctagggctagggt
Downstream sequence
ggaatggaatggaatggtgaaatgaaatgtgagctgagattgtgcagtgcaatgcagcctgggtgacctagtgcgatcctgtcaaaagaaaggaatggaa
Target sequence
gaatggaatggaatggaatggaatggaatggaatggaatggaatggaatgcaaaggaatggaatggaatggaatggaatggaatggaat
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate