Basic Information
VIS ID
TVIS10019004
Fusion event
HBV-LINC01497 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q24.3
Reference genome
GRCh37.55
Start
67958621/69962480 (Hg38)
End
67958621/69962480 (Hg38)
Location type
Intron1
Target gene
LINC01497
Nearest miRNA
hsa-mir-10226/Upstream/862824; hsa-mir-1250/Downstream/4786133;
Nearest TSS
ENST00000595228/Upstream/718; ENST00000588782/Downstream/88797;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/634784, chr17-CpG: 87/Downstream/206292
Upstream sequence
TGAGATTCCAACAAACCCAAAAAACATTCCCCACAAAATTAAAGGAAACAAAACAGAAAATAAACAACATTTAAAAACCCCAgccgggcatggtggctca
Downstream sequence
CAACTTTCAGGACTCACACTGATTTCCCTTTAGTTTTCTGTTTTTGTTAGTCTGCAGCAGAGTGGGAAATAGTTACTGTAAAGGGAAGTCTTAAGAAAAC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate