Basic Information
VIS ID
TVIS10019005
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37.55
Start
14021969/14021970 (Hg38)
End
14021969/14021970 (Hg38)
Nearest miRNA
hsa-mir-3976/Upstream/410770; hsa-mir-1-2/Downstream/808196;
Nearest TSS
ENST00000575820/Upstream/106263; ENST00000591211/Downstream/67965;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/152943, chr18-CpG: 33/Downstream/110031
Nearby gene
ZNF519
Upstream sequence
AATGTTCAAGAATTTAAGGATAAAAAGAGATTGATTCTTATTAatttttcacctttcagattagcaaaaattaaaagaccaacaatacaatgctgatgag
Downstream sequence
AATTAAATGATTGTCACAATGAAATGAAGGCAAGCAAAGCCATCACTATTTTATGTGAGAAGAAACAAAACATTAATCATTTAACTCTCTCTAGATAGAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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