DSCAM _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019009
Fusion event
HBV-DSCAM integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
GRCh37.55
Start
42196072/40824146 (Hg38)
End
42196072/40824146 (Hg38)
Location type
Intron32
Target gene
DSCAM
Nearest miRNA
hsa-let-7c/Upstream/611715; hsa-mir-3197/Downstream/343411;
Nearest TSS
ENST00000624081/Upstream/441063; ENST00000433378/Downstream/22993;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/641114, chr21-CpG: 34/Downstream/17438
Upstream sequence
ATTGTGAGACACCGCCATGGGGATAATCTAGACCCAACCTTATCAGCAGTCATGCTTGGATCATCCCCATTGGGCTCCCTCTGTCCCCCAGCCTCCCACC
Downstream sequence
TAGGTCAGTACCCAGCCGCCATCACTGTCCTAGTGGCAGATCATCTCACCCCGGCACCGTGGAATTAGCCTTTGCTTGGCCACCCTTCCACCAATTCTCT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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