CABIN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019010
Fusion event
HBV-CABIN1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37.55
Start
24410540/24014089 (Hg38)
End
24410540/24014089 (Hg38)
Location type
Intron1
Target gene
CABIN1
miRNAs that regulate target gene
hsa-mir-1226-3p ; hsa-mir-151a-3p ; hsa-mir-320a ; hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-1286/Upstream/1127710; hsa-let-7a-3/Downstream/1441557;
Nearest TSS
ENST00000624155/Upstream/2671; ENST00000474981/Downstream/40979;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/2479, chr22-CpG: 70/Downstream/141925
Nearest cancer related gene
CABIN1(OG, No orient, 0)
Upstream sequence
gtgatatttaccttgatctattggtttacttggtgtctaccaggtttctacaccataaaattactatccctttctaattaataagtctcttgggagagat
Downstream sequence
acattgagaggacacaaattctcgttctccacaaatttgctccctgactttagcatccatctgcagatctttgtggtgtttgcctaaaggtaattatttc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate