Basic Information
VIS ID
TVIS10019013
Fusion event
HBV-LOC101927967 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37.55
Start
78042468/77815342 (Hg38)
End
78042468/77815342 (Hg38)
Location type
Intron1
Fragile sites / regions
FRA2S
Target gene
LOC101927967
Nearest miRNA
hsa-mir-1285-2/Upstream/2724428; hsa-mir-10b/Downstream/1833952;
Nearest TSS
ENST00000437798/Upstream/143127; ENST00000443419/Downstream/100592;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2104329, chr2-CpG: 32/Downstream/1177724
Upstream sequence
CATAGAGAAAACTGGAACCCAAGTTTTTTCCCCCAAGAAAGCTACCACATGATGAGAAATCCATATTTTCATATTGAtttatttttgagacggagtctcg
Downstream sequence
ctccttcagatgttcagatgtgtccagagtttcttccttctggtgggttcatggtcttgctgacttcaggagtgaagccgcagacctttgcagtgagtgt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate