Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019014
Fusion event
HBV-DPP10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
End
116014278/115256702 (Hg38)
Location type
Intron1
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/1535334; hsa-mir-10b/Downstream/12166835;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/93513, chr2-CpG: 48/Downstream/2557834
Upstream sequence
CTTTTTCAGTTATAACAGAAAAACTATAATTTTGTTGGTTTAGAAAACTTCAGTTAATTCCCTTTCTATCTGGGTTTAGCAAAGTCAGCAAATAATGTGC
Downstream sequence
agtggttgcttcacagcccacttggattcttcccctgaaaattttctaacacctggccaagctgcagattttttaaacttttacactcttcttccttctt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.