Basic Information
VIS ID
TVIS10019017
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
q27.2
Reference genome
GRCh37.55
Start
185664165/185946377 (Hg38)
End
185664779/185946991 (Hg38)
Fragile sites / regions
FRA3C
Nearest miRNA
hsa-let-7g/Upstream/178473; hsa-mir-1248/Downstream/839681;
Nearest TSS
ENST00000440867/Upstream/8241; ENST00000453370/Downstream/117569;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/8136, chr3-CpG: 126/Downstream/160682
Nearby gene
NMRAL2P
Upstream sequence
TAGTCCTGGATCCGATGGGGGAAGGAGCCAAAAGCTGCCAGTCCAAACTGTCCAGCCCACCTGTGCTGTTTGTCTGTGATTTTGATGAACCTGATGGATG
Downstream sequence
aatagagtgagactttgcctcaaaaataaataaataattaaataaatgcaatgggaagctatcgaaatgttttaattagggggaatgtcttgactcagtt
Target sequence
tgtttgtcgggttccaggaacagagagaccCAACCATGGGATCCCAGTGGGTCCATCTgaggaccagagactgtggtacagagagcagggcttggacttcctggggttgtttcctgcctccacagtagctctctgagagaccctgggcaagtgtaacctctgtgcctctgtggcttcatctgtgaaataggaatgataataatacctacttcctatgcttgttgtcaggatccaaagaattactattttacataa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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