HCN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019021
Fusion event
HBV-HCN1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37.55
Start
45517067/45516965 (Hg38)
End
45517067/45516965 (Hg38)
Location type
Intron6
Target gene
HCN1
miRNAs that regulate target gene
hsa-mir-4662a-5p
Nearest miRNA
hsa-mir-10397/Upstream/6959404; hsa-mir-103a-1/Downstream/8434539;
Nearest TSS
ENST00000502646/Upstream/36829; ENST00000510987/Downstream/128296;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/707375, chr5-CpG: 100/Downstream/178327
Upstream sequence
CCTTGAACAAACAGGAAAAGGGCAATAAAGCCTttcattcattcatccattcattgctgcattcatgcatGTATTTAACAACATTTGCTAGCACCTTCCA
Downstream sequence
gcagaagtctgcagactctagacacagttccttctttattgatttatgcataaagagaatcataggactttgtggaaaactgtgttaggaaaaaaattgt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate