HECW1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019023
Fusion event
HBV-HECW1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37.55
Start
43337372/43297773 (Hg38)
End
43337373/43297774 (Hg38)
Location type
Intron3
Target gene
HECW1
miRNAs that regulate target gene
hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-5692a ; hsa-mir-4422 ; hsa-mir-548c-3p ; hsa-mir-6835-3p ; hsa-mir-29c-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p
Nearest miRNA
hsa-mir-1183/Upstream/146779; hsa-mir-10399/Downstream/753992;
Nearest TSS
ENST00000635602/Upstream/48505; ENST00000481031/Downstream/80004;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/48424, chr7-CpG: 65/Downstream/147017
Upstream sequence
atctatagtactaagttccttaaatctattatttaatctaaaactaacaataactctatagaacaatagttaataccctttagagctgaattttactcat
Downstream sequence
AAAAAAACTAAATTGggtcaggcatggtggctcacgcctatactcccagcactttgagaggccaaagcaggaggattactggaggccaggagttgaagac
Target sequence
A
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate