CYP2C8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019029
Fusion event
HBV-CYP2C8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37.55
Start
96807533/95047776 (Hg38)
End
96807533/95047776 (Hg38)
Location type
Intron4
Fragile sites / regions
FRA10D
Target gene
CYP2C8
miRNAs that regulate target gene
hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1178-3p ; hsa-mir-6749-5p
Nearest miRNA
hsa-mir-107/Upstream/5454949; hsa-mir-1287/Downstream/1016539;
Nearest TSS
ENST00000439456/Upstream/8401; ENST00000404473/Downstream/19654;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/501640, chr10-CpG: 63/Downstream/135662
Upstream sequence
aaatacaatgatttaaccactaatgttacagtaataacagtattctctatttgactatatatttacctttaccagtgatttttctactttcttatgataa
Downstream sequence
tccccccaccacatcacagtccccagagtgtgatattccgcttcctgtgtccatgtgttctcattgttcacttcccacctatgagtgacaatatctggtg
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate