Basic Information
VIS ID
TVIS10019034
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37.55
Start
96654459/96111230 (Hg38)
End
96654459/96111230 (Hg38)
Location type
Intronic
Target gene
LOC105369212 ; LOC112268156
Nearest miRNA
hsa-mir-10393/Upstream/3206755; hsa-mir-1302-10/Downstream/222031;
Nearest TSS
ENST00000557528/Upstream/26646; ENST00000560176/Downstream/14778;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/784137, chr15-CpG: 151/Downstream/210422
Nearby gene
NR2F2-AS1
Upstream sequence
ctctgtctccgggttcaagcgattcttgtgcctcagcctcccgagtagctgggattagaggtgtgcactgccatgctcggttaatttttgtatttttagt
Downstream sequence
TTTGATTGTCAAAAGACTATATGGCCATTATGTTTTCTGTCTCCTAGAATTAATGTGGTACCAAACATTCTGATAGTGCCTGACTGAGAGGGGAAAGAAG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate