CES1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019035
Fusion event
HBV-CES1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr16
Cytoband
q12.2
Reference genome
End
55844838/55810926 (Hg38)
Location type
Exon4
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1225/Upstream/5068139; hsa-mir-11401/Downstream/434594;
Upstream sequence
ATCTCAAGGGAGGAGTTATCTGGTCCAGAAAGGGGATCGTGACCTTTCCCCAGATTGGGACAGGGAGTGGGACTGTGATATTCTCTTAGCTGCAGGGTAC
Downstream sequence
AACAAGGGGATAGGACTTCCACAGGAGTGACATGGCTGTCTTCTGGTCCAGTTGCCCTTCGGAGAGTGGATAGCTCATCAACTGCTAAAAAAAAAAAAAA
Target sequence
CTCTGTGGTTCCGGGCCACAATCACAGATGGGACACCAAACATCACATCTGCTATCAAGTCCAGGAACAGGTCTTTCTTTTTGACAGTGTCGTCTGTTCCTCCTAAGTATTTCTCAGTGGCTTCTGGAATCAGTTCCTTAGCAATGCACTGAAATAGATCAAAAAGTGACCACCAGCCCCGGGTGAGCGATGCAGCTTCTCCAGCCCACCAGAAAGTCCTGCCTCAATGGTGAACCCCATAAGCCCTGTGCAACT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate