Basic Information
VIS ID
TVIS10019041
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p25.3
Reference genome
GRCh37.55
Start
15693/15693 (Hg38)
End
15693/15693 (Hg38)
Nearest miRNA
hsa-mir-10b/Downstream/5958969;
Nearest TSS
ENST00000437798/Downstream/27259;
Nearest CpG islands
None/Target, None/Upstream, chr2-CpG: 135/Downstream/29817
Nearby gene
FAM110C
Upstream sequence
aggccaggcactagacatgtgaatgtagaaacctcaagcgactcctgcctcagctgccatcttaatgcctctgcgtgagatgccaaatgagggtcgtccc
Downstream sequence
ATAGACACAACTTGAACCCTGCTTCTATATCCAGCCTCATCTATTATTTCCTCTCCTTCTTATTTTCCTTCTGGCCGTGCTGATGGATTGTCAGCTTCCC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate