Basic Information
VIS ID
TVIS10019042
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37.55
Start
14864167/14724043 (Hg38)
End
14864167/14724043 (Hg38)
Nearest miRNA
hsa-mir-3125/Upstream/1986599; hsa-mir-10b/Downstream/4624386;
Nearest TSS
ENST00000437798/Upstream/88547; ENST00000438178/Downstream/183621;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/88358, chr2-CpG: 27/Downstream/836972
Nearby gene
LOC653602
Upstream sequence
gggattaccggcatgagccacagtgtcaggccCAGATACTAAATTATCATTGAAACATACCTCTAGTCTATTATTGACAGTTTTCAAATAAAAGGAACTA
Downstream sequence
AGTTATGATATAACTGATCTCTGCCCTACAGAGGGGCTAAGAGGGAATAGAGGCTTTAAGCCACTTAGAGTCCAAGATAAGAGATTGAGATACGCAGACT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate