Basic Information
VIS ID
TVIS10019047
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37.55
Start
235037602/234128958 (Hg38)
End
235037999/234129355 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/1578385; hsa-mir-149/Downstream/3381576;
Nearest TSS
ENST00000437798/Upstream/19877; ENST00000565664/Downstream/93483;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/32446, chr2-CpG: 184/Downstream/366503
Nearby gene
SPP2
Upstream sequence
AAAGACAGACCATGGTGATGACTAATAAGGTGTCCTGCTTGCATCCATTCTGTCTTATGTCTGTATTAAGTTTCCAgggtatttggttcccagttaaaaa
Downstream sequence
tgttaaatttaaatgactgtgcgacattcaactagaaatatcaactgtggatatgtgagtctagacctcagaagagtgatcctacctagaggtataaatc
Target sequence
tccttctttccttccttccttcctttttctttctttctttctttctctttctttctttcctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctctttccttccttctttctttctttcatttctcccctccctccttccttccttccttcctttctctctctctctttctttctttctctttctttcttcctttctctctccctccctccctctctctctttcttcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate