Basic Information
VIS ID
TVIS10019049
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37.55
Start
17613872/17612249 (Hg38)
End
17613872/17612249 (Hg38)
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/3984292; hsa-mir-12115/Downstream/2916026;
Nearest TSS
ENST00000502981/Upstream/26480; ENST00000506409/Downstream/2322;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/34333, chr4-CpG: 25/Downstream/2303
Nearby gene
MED28
Upstream sequence
tcctgggtaaaccaagccctttcatttgagtgtagcttggggtctctggaaggggaatctctgggaggagagtcatagctaaggcttcttgtttagaagg
Downstream sequence
ttaacttatcagataaatattagcagacttaacccacataaacaaaaactttgggatcctcaataatttttaggagtgtaaaggggtcttgagaccaaaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate