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VISDB
Viral Integration Site DataBase
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TVIS10019051
Basic Information
VIS ID
TVIS10019051
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.32
Reference genome
GRCh37.55
Start
4516761/4516648 (Hg38)
End
4516764/4516651 (Hg38)
Nearest miRNA
hsa-mir-4277/Upstream/2807780; hsa-mir-10397/Downstream/2311202;
Nearest TSS
ENST00000502646/Upstream/4386;
ENST00000513925/Downstream/124080;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/554250
,
chr5-CpG: 39/Downstream/349553
Nearby gene
LINC02114
Upstream sequence
aacctccaccttccaggttcaagtgattgtcctgcctcagcctcccgactagctggggttatagacatgcaccacctactttcgtatttttaggagagac
Downstream sequence
gcgctgtaaaGGTTTGTTTTGAGAAGTGAATTAATCCTCATCTTGATCTACCTAGGGAGATCTAGTATACAAGAAATTCCTCTGTCATCTTTACTTTTTT
Target sequence
ccc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Sample Information
×
Sample name
65N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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